Re: [Freesurfer] high resolution data using recon-all

Hi Yun,

if it is for some reason impractical to use a beta version of FreeSurfer you can also try to follow the HiResRecon (http://freesurfer.net/fswiki/HiResRecon) I put together some time ago. This solves the issues related to high resolution data and will circumvent conformation to 1 mm^3.

However, if the subcortical segmentation is of interest or if you want to have a look at a future-proof processing pipeline you should aim for the beta version of FreeSurfer. Several improvements have been made to v6.0 so it's definitely worth checking out, especially for high resolution data.

Best, Falk

-----Ursprüngliche Nachricht----- Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Samstag, 10. Oktober 2015 19:23 An: Freesurfer support list Cc: Kyoko Fujimoto Betreff: Re: [Freesurfer] high resolution data using recon-all

Hi Yun

you should probably get a beta version of 6.0 - it has much improved highres support. 7T can be hard though. Kyoko Fujimoto (ccd) put together a pipeline for 7T that worked pretty well. You might check in with her Bruce

On Sat, 10 Oct 2015, Yun Wang wrote:

Hi All,

I have 7T high resolution data 0.625mm. Is it appropriate to process the data using recon-all ? If not, any idea?

Thanks!

Yun Wang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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