The .sch file is used for running command line version of flirt/siena for 2d registration with the -schedule option and is located in $FSLDIR/etc/flirtsch
If it is not there then ftp from the fsl site and copy them there.
Hope this helps. Shantanu
On Wed, July 10, 2013 10:03 pm, Douglas Greve wrote:
Does that file exist? doug
On 7/10/13 8:25 PM, Aaron Tanenbaum wrote:
Thank you fore responding. I ran recon-all and it worked fine. however when i run bbregister i get an error "ERROR: cannot find /usr/lib/fsl/etc/flirtsch/xyztrans.sch". I have installed fsl 5.0 and FSLDIR set right i am running this in ubuntu 12.04 using freesurfer 5.3. am I doing some thing wrong thank you Aaron Tanenbaum
On Wed, Jul 10, 2013 at 11:34 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
You will need to register your volume with the anatomical with bbregister. bbregister will take a "template" which should be thetime point you used for motion correction. Then run mri_vol2surf to create a new data set sampled on the surface doug
On 07/10/2013 12:32 PM, Aaron Tanenbaum wrote: > Hola Freesurfers, > I am new to Freesurfer and still learning the basics. I have been > given a project and have not found a way to do it. Part of thistask > involves taking a 4dfp volume time series and convert it to a time > series of a surface. This 4dfp I have is a statistical analysis mapped > on to a specific atlas volume. Does anyone know of a way to do this. > Any help will be highly appreciated. > Gracias > Aaron Tanenbaum > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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