Sure, my command would look something like this: mris_anatomical_stats -b average_subject lh white -l lh.mylabel Works on individual subjects, but not on the averaged one. The latter was created with make_average_subject --subjects STRU_1 STRU_2 [...] --out average_subject Thanks for your help, Johannes
Doug Greve schrieb:
The problem is that this is being done an the average subject, which does not have a wm.mgz file. Should be easy to fix. Johannes, can you send your cmd line?
doug
Nick Schmansky wrote:
Johannes,
wm.mgz is produced in the -autorecon2 stage of recon-all.
A handy table to consult is:
http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable
or
http://grahamwideman.com/gw/brain/fs/fsunderstanding2006/processvsdata2006.h...
Nick
On Tue, 2006-10-31 at 11:49 +0000, Johannes Klein wrote:
Hi everyone, I'm trying to calculate surface areas for some labels I've drawn on an averaged subject created with mrake_average_surface, and mris_anatomical_stats seems the way to go. Unfortunately, it needs a file called wm.mgz, which doesn't exist for my averaged subject. The mri subdir contains T1, brain, mni305.cor and orig.mgz, but no wm.mgz. Is there a way to create this file from the data I've got? Thanks for your help, Johannes _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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