I think it is probably an MNI problem. Can you run the following command and send the terminal output?
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
On 09/04/2016 06:13 PM, Saeed mahdizadeh bakhshmand wrote:
Hello FreeSurfer Developers,
I'm trying to test a very basic command (recon-all) according to this page(https://surfer.nmr.mgh.harvard.edu/fswiki/TestingFreeSurfer) after installing FreeSurfer and I receive following error after a few seconds: ERROR:recon-all -s bert exited with ERRORS at Sun Sep 4 17:18:51 EDT 2016
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
- FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
- Platform: x86_64
- uname -a: Linux saeed-CDS-Custom-Configuration 4.4.0-36-generic #55-Ubuntu SMP Thu Aug 11 18:01:55 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
- recon-all.log: see attached
Saeed
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