Hi Steve,
You can use ‘-hemi <lh|rh>’ to select which hemisphere to process. If you are interested in right hemisphere only, pass ‘-hemi rh’ to recon-all along with other flags.
I don’t have answers to your first question.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Steve Petersen Sent: Tuesday, November 15, 2022 11:39 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Recon-all in post stroke aphasic patients.
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Dear FreeSurfer experts,
I would like to run the recon-all command in MRI images of post-stroke aphasic patients. Should I use a particular flag in the recon-all command to avoid important errors during cortical reconstruction?. We are only interested in the right hemisphere (where there is no brain injury), can I conduct the recon-all only in the right hemisphere?.
Any help would be appreciated.
Thank you very much in advance.
Best regards,
Steve.