what are you visualizing it in? If you just look at it without the registration does it look ok? On Thu, 4 Apr 2013, qtnguyen@nmr.mgh.harvard.edu wrote:
Dear Freesurfer experts,
After I ran the functional to structural registration using the bbregister command, it looks like the dorsal part of the brain for this participant is cut off in the BOLD images. When we ran the scan, we made sure that the slice prescription covered the entire brain. We also looked at the functional scan in the control room right after the scan and it looked ok.
We aren't sure what went wrong and why the bold data is cut off. Is there any way I can look at the raw dicom files to check if it includes the entire brain?
Thank you,
Trang
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