Hi,
Is it possible to have the gifti output in the same referential as the orig nii file as well ? I tried mris_convert lh.white lh.white.gii -rl mri/orig/001.mgz but mris_convert doesn't have the -rl option.
Regards, Pierre
On Wed, Aug 10, 2016 at 2:40 PM, Iglesias, Eugenio e.iglesias@ucl.ac.uk wrote:
You can always run mri_convert with the -rl (“reslice like”) flag to achieve this. Something like: mri_convert input.mgz output.mgz -rl reference.mgz -odt float If it’s a segmentation volume, you should add -rt nearest, in order to use nearest neighbor interpolation. Cheers, Eugenio
Juan Eugenio Iglesias Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 10 Aug 2016, at 13:31, pierre deman deman.pierre@gmail.com wrote:
Hello,
I am trying to have the atlases aparc.a2009+aseg.mgz, hippocampal subfield etc ... in a matrix with the same size as the input of recon-all (and not the cubic matrix 256x256x256) and with the same orientation.
what is the best way to do it ?
Cheers, Pierre
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