Hi, I could not find the make file. I am using Mac OS (most recent). Thanks
Pedro Rosa
On 21 Aug 2013, at 10:51 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
You will need to add the "make" program to your path. In Linux, it is usually in /usr/bin doug
On 08/20/2013 10:12 PM, Pedro Rosa wrote:
Hi, Sorry for that! I tried using several targets: all / autorecon1-2-3, and for all I get 'make: command not found.' I used recon-all -s subject -make target Thank you again, Pedro Rosa
On 20 Aug 2013, at 12:34 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
They should be fine. BTW, you can run
recon-all -s subject -make all
and it will only run the parts that need to be run
doug
On 08/20/2013 12:13 PM, Pedro Rosa wrote:
Hi, I am mainly interested in using the wmparc.mgz files. Are they alright in the subjects with this error in autorecon2? It would be better if I could use this processing, as doing it again in 80 subjects would take a lot of time. Autorecon 1 and 3 ended without errors for all subjects. I inspected the wmparc.mgz files as labels using Slicer 4, and they seem fine. Thanks, Pedro Rosa.
On 20 Aug 2013, at 10:28 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Hi Pedro, see the release notes for the issue http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes doug
On 08/19/2013 10:06 PM, Pedro Rosa wrote:
Hi experts, I am processing several subjects, and they all ended up with the same error at the autorecon2: ribbon.mgz could not be opened. I ran at first the autorecon1 to check the skull striping, and then autorecon2 and 3. Autorecon3 always finished without error. I attached a log file.
Any help is appreciated. Regards, Pedro Rosa.
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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