You can use mri_vol2vol to convert the input volume to the output space (ie, reslice), or you can use the --no-resample option to keep it in it's native space and just change the qform/sform matrix (sounds like what you want).
doug
On Fri, 15 Feb 2008, Garrett McGrath wrote:
To the freesurfer people: I would like to know if there is a way to generate a new volume file from the original volume file using the matrix of transformations generated by tkregister. I need to be able to transport those changes over to afni which lacks the nice interface freesurfer has for registration. Is there currently a way to do this? or an easy way to convert those values into something usable by afni? -Garrett McGrath _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer