Hello, Thanks for adapting fslcal.fsl to work on surfaces Doug. This is very helpful. It was working for me until today.
I'm working on thigpen.
setenv SUBJECTS_DIR /space/brich_004/users/akram/HRDEV_processing
mri_surf2surf --srcsubject 03222007_4TT_clindem47 --sval \ 03222007_4TT_clindem47/surf/rh.thickness --trgsubject HRDEV197_1mm \ --tval 03222007_4TT_clindem47/surf/rh.thickness_to_HRDEV197.mgh --hemi rh
mri_surf2surf --s HRDEV197_1mm --sval \ 03222007_4TT_clindem47/surf/rh.thickness_to_HRDEV197.mgh --tval \ 03222007_4TT_clindem47/surf/rh.thickness_to_HRDEV197.fwhm15.mgh --fwhm 15 \ --hemi r
mri_surf2surf --s HRDEV197_1mm --sval HRDEV197_1mm/surf/rh.thickness --tval HRDEV197_1mm/surf/rh.thickness.fwhm15.mgh --fwhm 15 --hemi rh
fscalc.fsl HRDEV197_1mm/surf/rh.thickness.fwhm15.mgh -sub \ 03222007_4TT_clindem47/surf/rh.thickness_to_HRDEV197.fwhm15.mgh \ HRDEV197_1mm/surf/tp1_min_tp2.thickness.mgh --surf HRDEV197_1mm rh
I get the following error: ** ERROR: nifti_convert_nhdr2nim: bad dim[1] ** ERROR (nifti_image_read): cannot create nifti image from header 'HRDEV197_1mm/surf/tmp.fscalc.fsl.23248/s1.nii.gz' ** ERROR: nifti_image_open(HRDEV197_1mm/surf/tmp.fscalc.fsl.23248/s1): bad header info Error: failed to open file HRDEV197_1mm/surf/tmp.fscalc.fsl.23248/s1 Cannot open volume HRDEV197_1mm/surf/tmp.fscalc.fsl.23248/s1 for reading!
It's weird, because I did exactly the same thing with a different subject tp1 and tp2 two days ago and it worked great! Thanks for the help! Akram.