Hi there,
I recently tried to process a scan with v4.0.5, and it failed while checking the Talaraich transform. I manually fixed the transform using the tutorial (http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach) and saved it, but I'm confused about how to proceed. The tutorial seems to say to rerun it from scratch, but I'm not clear on how to get it to use the corrected transform since I thought that rerunning it as written in the tutorial would overwrite everything. How do I incorporate the corrected transform I made into the usual recon-all commands?
Thanks, Tali