You can just
mri_segstats --i thickness.stack.mgh --seg cache.th30.pos.sig.ocn.nii.gz --excludeid 0 --avgwf thickness.stack.cluster.dat
Each row in thickness.stack.cluster.dat will be a subject, and each column is a cluster
On 11/09/2016 04:16 PM, Elijah Mak wrote:
Hi Freesurfer Team,
- We've found some subtle differences in tau accumulation between two
groups. Unfortunately, it does not survive mri_glmfit-sim (voxel threshold 0.001, cwp < 0.05). Still, I would like to extract the structural measures from the uncorrected tau clusters (p<0.001). What is the most convenient approach for this?
Could the following URL (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg16268.html http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg16268.html ) be a solution? Can mri_label2label work for sig.mgh with multiple clusters?
- A slightly unrelated question: how can I go about using this
particular cluster as a seed for functional or tractography analysis in other softwares (i.e. FSL or MRTRIX) or even within Freesurfer if possible?
Thanks again. Really appreciate your help!
Best Wishes, Elijah
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