External Email - Use Caution
Hi William,
I wanted to use both T1 and T2 to do the recon -all -all.
Could it be:
-
recon-all -subject subjectname -i invol1 <-i invol2> -all
El mié., 3 mar. 2021 17:16, Ammon, William WAMMON@mgh.harvard.edu escribió:
Hi Rosalia,
You can include T2 images by adding the flags -T2 /path/to/volume (to point to the T2 images) and -T2pial -all (to generate new pial surfaces using T2 images).
You can read more about this here https://secure-web.cisco.com/1-kKoxBlghDNt9knl5SHKY-AN5hisd2dv9vY-TyxuuixDypboRpqcOZD4spjJfNrqoQ7lNcImlg2d3KaMoRCCAx07RBL5eYJeluoihgs4VgUpNVlUeSCLfSXJTJWa29ulVt1tCzhDA5L3HbSAWlNzdoZsfrWxve-zkvFgPbZfK_8XhHfkvuuWIVlpTuEq_pyIXpmb_3OOQq-yg-ERdHMRgyfFQmTbUdGpCeCMfNW6NItYcf2ydKUFVaraXcXlb3iKIGaPLQxlB6hThbBwTx0EXw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frecon-all%23UsingT2orFLAIRdatatoimprovepialsurfaces on our wiki.
Bill Ammon
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Rosalia Dacosta Aguayo rdacostaa@gmail.com *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Wednesday, March 3, 2021 at 7:36 AM *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Include T2 in recon-all command
External Email - Use Caution *Dear Freesurfer community,
I would like to include the T2 image in the recon-all command to improve segmentation.
Any idea how I should do this in the following command?
recon-all -s Artico1 -i subj01_anat.nii.gz -all -qcache -3T
Regards,
Rosalia _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1VBMQ2fXINrA7ekn-dlB3ZVLR3xICdlpTNQW6z_pii6HpWo...