Hi Andrew,
I have followed your suggestion and the error pop up like this:
Xues-MacBook-Air:~ DannyDeng$ mkdir test_subjects mkdir: test_subjects: File exists Xues-MacBook-Air:~ DannyDeng$ export SUBJECTS_DIR=/path/to/test_subjects Xues-MacBook-Air:~ DannyDeng$ cd${FREESURFER_HOME}/subjects/sample-001.nii.gz -bash: cd/Applications/freesurfer/subjects/sample-001.nii.gz: Not a directory Xues-MacBook-Air:~ DannyDeng$ cd${FREESURFER_HOME}/subjects -bash: cd/Applications/freesurfer/subjects: Not a directory Xues-MacBook-Air:~ DannyDeng$ cd ${FREESURFER_HOME}/subjects Xues-MacBook-Air:subjects DannyDeng$ recon-all -i sample-001.nii.gz -s bert -all ERROR: cannot find sample-001.nii.gz Darwin Xues-MacBook-Air.local 16.7.0 Darwin Kernel Version 16.7.0: Thu Jun 15 17:36:27 PDT 2017; root:xnu-3789.70.16~2/RELEASE_X86_64 x86_64
recon-all -s exited with ERRORS at Wed Nov 8 16:50:37 HKT 2017
For more details, see the log file To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Xues-MacBook-Air:subjects DannyDeng$
Sorry I am a beginner.
Best Regards, Danny Deng
On Nov 8, 2017, at 10:48 AM, Hoopes, Andrew AHOOPES@mgh.harvard.edu wrote:
recon-all -i sample-001.nii.gz -s bert -all