External Email - Use Caution
Dear Freesurfer Developers,
I have recently switched to a Mac for ease of use and have encountered an error upon trying to view output files from a previous data cohort which were processed on a remote computing server and copied to this Mac's local drive. I am able to view all surfaces and volumes of the native bert tutorial set, however am unable to view my own outputs.
In the terminal I receive the following error:
Katarinas-MacBook-Pro:mdc026 kduvnjak$ freeview -v /Applications/freesurfer/subjects/mdc026/mri/wm.mgz
mghRead(/Applications/freesurfer/subjects/mdc026/mri/wm.mgz, -1): could not open file
MRIread failed: Unable to read from /Applications/freesurfer/subjects/mdc026/mri/wm.mgz
mghRead(/Applications/freesurfer/subjects/mdc026/mri/wm.mgz, -1): could not open file
2021-06-02 11:07:49.903 Freeview[6760:441577] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
Please find below any additional relevant information:
Freesurfer version: freesurfer-i386-apple-darwin11.4.2-stable6-20170119 (freesurfer-Darwin-OSX-stable-pub-v6.0.0.dmghttps://secure-web.cisco.com/13d8iRus52q-OHqUT-mKsxtr9lAYTVlnK-JKuHKACZf9jOMWPizUMC_qZ0WbFj8CE3kOuqFEg1n3-BC5NmSKZVUPZSzKYFTtuG_CUma6cnLGQM6qFviH9Cxs2cZKH8vjdwdQ2ctDlxNMmIqHmUbJTHrXocYZC4ZphPr6SiApk4U3-gpl-b71XuIPByOVpoFw4GpGal0qOLQKc0dg97tF8imgRuGiZ7yYFg9z6PF-BQhvvmKQ1PmgQ3MtJUheFCChzyAn-GGxdWBbPlrcKd4Jd5A/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F6.0.0%2Ffreesurfer-Darwin-OSX-stable-pub-v6.0.0.dmg) Platform: macOS Sierra Version 10.12.6 uname -a:
Darwin Katarinas-MacBook-Pro.local 16.7.0 Darwin Kernel Version 16.7.0: Thu Dec 20 21:53:35 PST 2018; root:xnu-3789.73.31~1/RELEASE_X86_64 x86_64
I am also strangely unable to attach the recon-all file to this email. Perhaps this is some sort of permissions issue, although I have sudo chown for this user on the dir and that didn't seem to help.
Kind regards, Aleksandar