The Yeo et al, 2011 template
Reuben A.
Get Outlook for iOShttps://aka.ms/o0ukef ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Thomas Yeo ythomas@csail.mit.edu Sent: Sunday, August 14, 2022 6:59:51 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Parcellation issue
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Hi Reuben,
What template are you trying to use?
Regards, Thomas
On Tue, Aug 9, 2022 at 8:39 PM Addison, Reuben <RAddison@mghihp.edumailto:RAddison@mghihp.edu> wrote:
I want to use a different template apart from the MNI for my parcellation (Yeo_JNeurophysiol11_FreeSurfer.zip). Below are the instructions given in the readme. My question is – do I need to run this code before Recon-all or after
In terminal (ASSUMING shell is bash),
a) "cd" to unzipped folder containing this README file, fsaverage, fsaverage6, fsaverage5
b) export SUBJECTS_DIR=`pwd`
c) tksurfer fsaverage5 lh inflated -annotation fsaverage5/label/lh.Yeo2011_7Networks_N1000.annot
Reuben A.
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