Sorry, I'm not sure I understand. You want the lobes annotation but you want to merge the cingulate with the frontal? After you run the 1st mri_annotation2label, run it again with the lobes as the input annotation and specifying --outdir to break up the annotation into labels. Then run your mergelabels command to merge cingulate with frontal. Then run mris_label2annot to create a new annotation with the merged labels.
On 08/03/2018 05:40 PM, Fernanda Hansen P. de Moraes wrote:
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Dear FreeSurfer experts,
I want to get with mris_anatomical_stats the stats from the four lobes, Frontal, Parietal, Temporal and Occipital as suggest here (https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation), but without the cingulate.
I am trying to use the mri_mergelabels to merge that labels: Rostral Anterior (Frontal) Caudal Anterior (Frontal) Posterior (Parietal) Isthmus (Parietal) in their lobes, but I am facing some difficulties. I am sorry if this is a basic question, but I couldn't find an example that worked for me in the mail archive.
I am following these steps:
mri_annotation2label --subject PRI002 --hemi lh --lobesStrict lh.lobesStrict.annot mri_mergelabels -i lh.frontal -i lh.rostralanteriorcingulate -i lh.caudalanteriorcingulate -o lh.frontal
Is there an easier way to do it?
Thank you very much in advance, Fernanda Hansen P. de Moraes
-- Fernanda Hansen P. de Moraes
Física Médica | Rede D'Or São Luiz Doutoranda em Ciências Médicas | Instituto D'Or de Pesquisa e Ensino
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