Hi Mike
what kind of mismatch do you mean? Bruce On Mon, 13 Jan 2014, Harms, Michael wrote:
To add to this thread, I have this same problem (upside-down display in tksurfer, with mismatch with the reported annotation labels in the Tools window) when using a CentOS 6.4 system, using both FS 5.1 and FS 5.3, but not when using a CentOS 5.5 system.
If there is an easy fix for this (environment or system variable of some sort?) that would be very helpful to know.
thanks, -MH
-- Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mharms@wustl.edu
From: Doug Greve greve@nmr.mgh.harvard.edu Date: Sunday, January 12, 2014 11:34 AM To: "Schweren, LJS (med)" l.j.s.schweren@umcg.nl, free surfer freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] brain orientation in qdecDouglas N Greve
Sounds like it is some problem with the display libraries. I think someone else was having the same problem recently (ie, hemisphere displayed upside down in tksurfer). Does anyone remember? Zeke? doug
On 1/12/14 5:03 AM, Schweren, LJS (med) wrote:
No, in Freeview I encountered no such problems. Also in tkmedit the brains a ppear in normal orientation. Also, the scale bars and titles are displayed upside down in tksurfer.
Best, Lizanne
Does the same thing happen in freeview?
On 01/06/2014 04:45 AM, L. Schweren wrote:
Dear experts,
I ran recon-all with qcache. When loading the right hemisphere of fsaverage (or any other surface reconstruction) into tksurfer (for example command: tksurfer fsaverage rh white), the left hemisphere surface is displayed, and it is upside down. When I import annotations they load in the same orientation as the surface. However, the coordinates and the labels, displayed in the Tksurfer Tools window, are not. For example, when I move the cursor to the temporal lobe, the label says it’s postcentral. I do not mind manually turning the surfaces in tksurfer, but I do need to be sure I am looking at the correct hemispheres, coordinates and labels.
I hope you can help me solve this. Thank you in advance.
Best wishes,
Lizanne
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