Good Morning, List.
I'm recon-all(ing) a bunch of T1 images using the command recon-all -i input.nii.gz -subject name -all -sd /path/to/subject/directory Most of the time, these are running just fine, but occasionally, they are exiting with error (recon-all.log attached). I don't understand what is going on, as the input data looks okay and I'm running the same command over and over (using PBS)….
Any help would be appreciated.
Best Wishes
Peter