The 4 number columns represent: Red Green Blue and Alpha
The numbers range from 0-255. They can be combined to create any color. Play around, and you will see what it does.
hth, d
On Tue, Mar 1, 2016 at 5:37 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Thank you so much for you descriptions. I checked out the link you just sent me. Because I do not have many experiences working with Freesurfer, I really could not understand about how I can do such this revising in LUT file. Can you explain more about this? I truly appreciate your time and help.
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 3:49 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
I really appreciate you for help me in this process. May you clarify me from which pattern you changed the RGB values for that region? How I can change the coordinates for the others?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 2:51 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
I should let you know that, it works! It shows paracentral name in tksurfer. So, how I have to revise my .ctab file to get the right result?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 1:10 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Thank you for your response. I just used the command you suggested to use by just a change in calling .ctab LUT file. I used the path: 002_S_0413/labels/aparc.annot.a2009s.ctab because I could not work by just calling aparc.annot.a2009s.ctab. It is strange that I created annot file for lh.G_and_S_paracentral.label, but it shows its name in tksurfer: G_and_S_frontomarg! I excluded the part --nhits too. So, what is your opinion?
Regards, Faezeh Vedaei
On Tue, Mar 1, 2016 at 10:57 AM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi,
Here is the text format of those files.
Regards, Faezeh Vedaei
On Mon, Feb 29, 2016 at 5:30 PM, Faeze Vedaei faezevedaei@gmail.com wrote:
Hi
Thank you so much for your response. I attached here three files including the command lines, LUT file , and the list of names I want to get and what the result is actually. I'd appreciate if you look at them and let me know what is wrong with that.
Regards, Faezeh Vedaei
On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei faezevedaei@gmail.com wrote: > > Hi, > > I checked again to arrange the labels in the order of LUT file, but > the result has not changed. Can you help me more how I can fix this problem? > Thank you so much for your time and help. > > Regards, > Faezeh Vedaei > > On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei faezevedaei@gmail.com > wrote: >> >> Hi, >> >> Thank you for your response. Yes, you are right. The names come from >> the color LUT file. But, the issue is that I chose the label files from that >> LUT file too. It meas the source that I chose the label files from and the >> source of the region's names in tksurfer are the same. The problem is just I >> do not have the label's names I merged to create annot file, in the tksurfer >> GUI. It shows another names of that list! So, what do you think about? What >> is the problem? >> >> Regards, >> Faezeh Vedaei >> >> On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei >> faezevedaei@gmail.com wrote: >>> >>> Hi Freesurfer experts, >>> >>> I have created an annotation file by several label files using >>> mris_label2annot command in Freesurfer. The problem is that when I open this >>> annot file in tksurfer and click on colored regions which corresponded to >>> specific labels I had chosen them, I do not have their name on the vertex >>> information part at the bottom of tksurfer GUI. It shows very different >>> names for these regions. May you explains me what is the problem I could not >>> see the exact region's name as I have them for label files? >>> >>> Thanks, >>> Faezeh Vedaei >> >> >
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.