Hello all,
I recon-all'd ~40 different subjects. I have been going through all the images to make sure they were processed correctly. Most required no no editing and recon-all did a very good job.
But for one scan in particular, it looks like Freesurfer thinks the top of the spinal cord is the brain. Several vertebrae are very nicely segmented... :P
Just wondering if you have any suggestions for reprocessing this subject? The error is reproducible with default recon-all settings.
Subject has some pathology in the white matter which might be causing the problem?
Screenshot of T1.mgz + lh.pial at the following link: http://imgur.com/a/uwyaq
Thanks, Eli
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