Dear professor, I'm a postgraduate of neurosurgery. Recently, I'm interested in cortical parcellation and subcortical segmentation using freesurfer. In my study, all patients have brain tumors. So I begin to wonder if "recon-all" can still be applied to these subjects, or in other word, is it possible that freesurfer's automated brain segmentation could be applied to brain tumor patients because their normal structures were changed? If I just run it regularly according to fswiki, would the outcome be accurate? Second question is about automatic tractography using TRACULA. Similarly, I'd like to use "trac-all" to reconstruct arcuate fasciculus in patients with brain tumor, is it possible? How can I set up the configuration? Hope to hear from you soon. Best wishes!
Sincerely