Hi,
I am new to freesurfer and was trying to run it on couple of my subjects but I am stuck (for last 40 hrs) at stage
"mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /home/sray2/Desktop/combirx/cr052_ip_output/mri/transforms/cc_up.lta cr052_ip_output"
it seems. The last few lines of the log file were:
searching scale 1 Z rot 9.9 searching scale 1 Z rot 10.1 global minimum found at slice 122.0, rotations (-3.99, 3.36) final transformation (x=122.0, yr=-3.992, zr=3.355): 0.996 -0.059 -0.069 25.704; 0.058 0.998 -0.004 -3.212; 0.070 0.000 0.998 -51.078; 0.000 0.000 0.000 1.000;
Have anyone came across this error before ? and know how to fix this. Please let me know.
Thanks in advance.
~Siddharth Ray
P.S. I have attached the log file here.