i setup freesurfer out of MGH, and run the following command as you recommend to test the installation.
tksurfer bert rh pial and i got this;
surfer: current subjects dir: /disk3/ans2/ansfreesurfer/subject/ surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /disk3/ans2/ansfreesurfer/subject surfer: Reading header info from /disk3/ans2/ansfreesurfer/subject//bert/mri/T1.mgz surfer: vertices=131860, faces=263716 Loading /usr/local/freesurfer/surface_labels.txt surfer: ### redraw failed: no gl window open surfer: single buffered window surfer: tkoInitWindow(bert) surfer: using interface /usr/local/freesurfer/lib/tcl/tksurfer.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_common.tcl Reading /usr/local/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations...
with attached weird figure... where i can see is only a part of the brain.
this is my environment; Linux pucca 2.6.18-128.2.1.el5 #1 SMP Tue Jul 14 06:36:37 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux on CENTOS5.3
did i make mistake when i installed freesurfer? it happened when i did tksurfer on my data, too.
thanks for your time.
-jeungchan
