---------- Forwarded message ---------- From: fatma zribi zribi.fatma@gmail.com Date: 2013/7/10 Subject: Re: [Freesurfer] how to use mris_register? To: Bruce Fischl fischl@nmr.mgh.harvard.edu
Hi Bruce,
Thank you very much for your help but it still don't work.
mris_register s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere avg_all_subjects_SD/lh.reg.template.tif lh.sphere_reg
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere... MRISread(s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere): could not open file No such file or directory mris_register: could not read surface file s000_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere
No such file or directory
note that the file exist in the folder and i have changed the SUBJECT_DIR to the appropriate folder
Thank you very much for your help
with best regards,
Fatma
2013/7/9 Bruce Fischl fischl@nmr.mgh.harvard.edu
Hi Fatma
don't use the -1 flag if you are regtering to a template, only if you are registering individual surfaces to each other. You probably want the output to be named lh.sphere_reg and go in the s000/surf dir.
cheers Bruce
On Tue, 9 Jul 2013, fatma zribi wrote:
Dear Mr,
When I execute mris_register to register one subject to a template., I have this message of error:
mris_register -1 s000/surf/lh.sphere avg_all_subjects_SD/lh.reg.**template.tif sphere_reg treating target as a single subject's surface... $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ reading surface from s000_open_brain_sanlm_+TIR_** normlalized/surf/lh.sphere... MRISread(s000_open_brain_**sanlm_+TIR_normlalized/surf/**lh.sphere): could not open file No such file or directory mris_register: could not read surface file s000/surf/lh.sphere No such file or directory
note that the file exist in the specifeid SUBJECT_DIR
Thank you for your help
Fatma
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