You can use the version 6 mri_glmfit which you can get from here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit
On 06/16/2016 07:51 AM, Robby De Pauw wrote:
Dear FreeSurfer users
I am not able to extract the Z-values as they are not present in my output:
z.mgh -- z-stat that corresponds to the significance
Are these Z-values always produced (or only in case of two group comparison)? Is there a way to produce this map myself?
This is my output after fitting the model (mri_glmfit) and after clusterwise correction for MC:
C.dat cache.th13.abs.sig.voxel.mgh
F.asc cache.th13.abs.y.ocn.dat
F.csv cnr.mgh
F.mgh gamma.mgh
cache.th13.abs.pdf.dat gammavar.mgh
cache.th13.abs.sig.cluster.mgh maxvox.dat
cache.th13.abs.sig.cluster.summary sig.asc
cache.th13.abs.sig.masked.mgh sig.csv
cache.th13.abs.sig.ocn.annot sig.mgh
cache.th13.abs.sig.ocn.mgh
I am currently working on the latest version of FreeSurfer:
freesurfer-Darwin-lion-stable-pub-v5.3.0
Thank you for your response,
Greetings
Robby
Robby De Pauw, PT, MT, drs.
*T *+32 09 332 12 19* | Email *Robby.DePauw@Ugent.be mailto:Robby.DePauw@ugent.be
Ghent University *| *Rehabilitation Sciences and Physiotherapy
Campus Heymans 3B3 (022)
De Pintelaan 185 BE-9000 Ghent
Route to my office https://soleway.ugent.be/routes/1090
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