What command did you run? Do you want to upload the dataset?
On Sep 16, 2011, at 10:52 PM, "Sindhuja Tirumalai Govindarajan" sindhuja@nmr.mgh.harvard.edu wrote:
Hi Khoa and Bruce,
I added control points along the white surface - it did not help much in extending the pial surface.
Looks like there might be some kind of gray matter pathology there as well
On Sep 16, 2011, at 3:07 PM, Khoa Nguyen khoa@nmr.mgh.harvard.edu wrote:
Hi,
How is the intensity of the wm between the putamen and the white surface? If it's lower than 110, you can place a string of control points along the inside border of the white surface. That might help extend the pial surf to include all the gm.
-Khoa
On Fri, 16 Sep 2011, Sindhuja Tirumalai Govindarajan wrote:
Hi all,
I ran into an issue similar to the manual editing problem discussed yesterday and earlier today. The pial surface seems to cut into the gray matter regions. However, there seems to be no wm problem in the neighborhood. Are there any tools to fix this?
I have attached snapshots for your reference. Any advice on how to include the gray matter would be helpful!
Thanks, Sindhuja
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