Re: [Freesurfer] merge cortical and subcortical labels

yes, use mri_cor2label.

doug

Stefan Brauns wrote:

Thank you for your immediate response.

That will probably do it. Would I extract these labels with the command mri_cor2label or is there an easier way?

On Thu, May 6, 2010 at 5:30 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:

Hi Stefan,

can't you just extract the labels you want from the aparc+aseg.mgz?

cheers,
Bruce

On Thu, 6 May 2010, Stefan Brauns wrote:

    Dear Freesurfer experts,

    I want to create a medial temporal lobe label. Is it possible
    to merge
    subcortical and cortical labels? Do I therefore need to use
    the --regmethod
    volume flag of mri_label2label for cortical labels?

    Many thanks in advance,
    Stefan



The information in this e-mail is intended only for the person to
whom it is
addressed. If you believe this e-mail was sent to you in error and
the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to
you in error
but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.

-- Stefan Brauns 512 Medford St Somerville, MA 02145

phone: (617) 398-0437

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer