Your answer crossed my question in cyber space. I always knew the freesurfer people were superhuman!
Brian
From: Bruce Fischl fischl@nmr.mgh.harvard.edu Date: Sat, 25 Mar 2006 19:27:11 -0500 (EST) To: Shahabuddin Ansari ansari_shahab@yahoo.com Cc: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Re: Transformation of segmenation
p.s. from the subject's mri dir.
On Sat, 25 Mar 2006, Shahabuddin Ansari wrote:
Hello Bruce,
Let me rephrase my question. When I pass a brain MRI to freesurfer, it transforms the image spatially before it does the segmentation. Now the segmented objects have different orientation from the original MRI. My question is how can I transform the segmentation back to original MRI?
Thanks Shahab
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