That is the input diffusion weighted time series.
doug
Weisinger, Brian (NIH/OD) [E] wrote:
Hello,
I am trying to run the dt_recon with the fractional anisotropy to do a project with white matter.
I am running into a problem actually getting the command to work.
I am trying to follow the example online
dt_recon --i 6-1025.dcm --s M87102113 --o dti dt_recon --i f.nii --b f.bvals f.bvecs --s M87102113 --o dti
But I am not sure where/what I am supposed to put after the -i.
The other stuff I am pretty sure I know, --s = the subject folder --o = the folder I want the output to go in
Can you fill me in on what I'm missing, I looked in the subjects output files and could not find anything that ended with .dcm.
Thank you,
Brian Weisinger
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer