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Thank you! It worked far better on that subject. However I also have a scan that is cut in the upper part and I ended up in this situation after running charm. What could I do in this case? Thank you so much! Francesco
Il giorno mar 10 dic 2024 alle ore 17:52 Douglas N. Greve dgreve@mgh.harvard.edu ha scritto:
It is probably indirectly related to the large slice thickness. You might try running recon-all_clinical.sh
On 12/10/2024 11:28 AM, Francesco Lomi wrote:
External Email - Use CautionDear all, I am writing you because I would like to know why recon-all on this subject exited with an error (I have uploaded the log file so you can see). Is it due to the poor quality of the T1 image? How to overcome this issue? I've added the FLAIR sequence to improve the surface reconstruction but the recon-all process did not end correctly. If you had any suggestions, they would be highly appreciated Best, Francesco
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