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Hi all,
I'm trying to run -autorecon2 on 3 subjects (I already ran -autorecon1 on them with no errors.) and I'm getting an error after the -final_surfs part saying that lh.white does not exits (and it doesn't, I checked for it). I have run about 10 other subjects, and they all ran fine and contain ?h.white files. I saw 2 other strings in the archive with this same issue, but there was no resolution to them. This error just started happening, and I didn't change anything. Here's the command I've been using:
recon-all -subjid <my subject #> -T2 <name of t2.nii file> -T2pial -autorecon2
Here's the error output:
MRISread(/home/waw758/Desktop/secure/Mbemba/Mbemba_freesurfer_stuff/analysis_files/ANG_1034/surf/lh.white): could not open file
I'm running freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c on a virtual machine running Red Hat Enterprise Linux Workstation 7.6
I've attached the recon-all.log file
Thanks!
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Wade A. Weber, MS Psychiatry Research Program Coordinator
Dell Medical School | The University of Texas at Austin o: 512-495-5217 | f: 512-495-5482 | dellmedschool.utexas.edu