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Dear Freesurfer developers,
The hip segmentation starts running and the matlab icon pops up as well but it stops abruptly and shows this error instead:
#-------------------------------------------- #@# Hippocampal Subfields processing (T1) left Wed Apr 6 13:44:29 +08 2022 ------------------------------------------ Setting up environment variables --- DYLD_LIBRARY_PATH is .:/Applications/freesurfer/7.2.0/MCRv84//runtime/maci64:/Applications/freesurfer/7.2.0/MCRv84//bin/maci64:/Applications/freesurfer/7.2.0/MCRv84//sys/os/maci64:/Applications/freesurfer/7.2.0/lib/gcc/lib: Registering imageDump.mgz to hippocampal mask from ASEG Error using images.internal.morphmex Invalid MEX-file '/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/morphmex.mexmaci64': dlopen(/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/morphmex.mexmaci64, 0x0006): Library not loaded: @rpath/libmwimages_res.dylib Referenced from: /private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/morphmex.mexmaci64 Reason: tried: './libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/MCRv84//runtime/maci64/libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/MCRv84//bin/maci64/libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/MCRv84//sys/os/maci64/libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/lib/gcc/lib/libmwimages_res.dylib' (no such file), '/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/./libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/../../../../../bin/maci64/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/../../../../../sys/os/maci64/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/./libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/../../../../../bin/maci64/libmwimages_res.dylib' (no such file), '/private/tmp/MCR_3070620170/.mcrCache8.4/segmen0/toolbox/images/images/+images/+internal/../../../../../sys/os/maci64/libmwimages_res.dylib' (no such file), '/Applications/MATLAB_R2014b.app/bin/maci64/libmwimages_res.dylib' (no such file), '/Applications/MATLAB_R2014b.app/bin/maci64/./libmwimages_res.dylib' (no such file), '/Applications/MATLAB_R2014b.app/bin/maci64/../../sys/os/maci64/libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/./libmwimages_res.dylib' (no such file), '/Applications/freesurfer/7.2.0/bin/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/../../sys/os/maci64/libmwimages_res.dylib' (no such file), '/usr/local/lib/libmwimages_res.dylib' (no such file), '/usr/lib/libmwimages_res.dylib' (no such file)
Error in images.internal.morphop (line 99)
Error in imerode (line 122)
Error in segmentSubjectT1_autoEstimateAlveusML (line 188)
MATLAB:invalidMEXFile Darwin Ashwatis-MacBook-Pro.local 21.3.0 Darwin Kernel Version 21.3.0: Wed Jan 5 21:37:58 PST 2022; root:xnu-8019.80.24~20/RELEASE_ARM64_T8101 arm64
T1 hippocampal subfields exited with ERRORS at Wed Apr 6 13:44:48 +08 2022
For more details, see the log file /Users/ashwativipin/Desktop/Freesurfer/Stats//BIOC_0001_v01_T1_FS/scripts/hippocampal-subfields-T1.log
I’ve attached the logfile as well.
ls /Applications/freesurfer/7.2.0/MCRv84/ gives me the following output:
[cid2539829440*image001.png@01D849BC.F5AB1960]
Please help.
Best, Ashwati
-- Ashwati Vipin (PhD) Research Fellow - Dementia Research Centre Lee Kong Chian School of Medicine Nanyang Technological University, Singapore [signature_1222593402]
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