Hi:
Ok... I test it with the command that you told me, and I added the option "wsthresh 35"... Then I got a good skull stripped image...
Sincerely,
Gonzalo Rojas Costa Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
Nick Schmansky escribió:
another thing to try is include the flag -no-wsgcaatlas flag, like this:
recon-all -s subjid -skull-strip -no-wsgcaatlas
this bypasses usage of the atlas.
if that fails, you can send me the 001.mgz input file to the filedrop:
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
n.