Hi Lars,
mris2rgb is deprecated. What version are you running? The new recon-all won't call it - you can comment it out of the script if you want, or update your version.
cheers, Brue
On Mon, 17 Oct 2005, Lars Tjelta Westlye wrote:
Dear all,
I'm encountering following error when running morph_subject <subject>. What is wrong?
............. registration took 0.67 hours writing registered surface to ../surf/lh.rh.sphere.reg... /var/lab-data/genetic/id106 /var/lab-data/genetic/id106/scripts /var/lab-data/genetic/id106/scripts
/var/lab-data/genetic/id106/scripts mris2rgb -o id106.reg -both -c /var/lab-data/genetic/id106/surf/lh.sulc -canon /var/lab-data/genetic/id106/surf/lh.sphere.reg /var/lab-data/genetic/id106/surf/lh.sphere.reg /var/lab-data/genetic/id106/rgb
using id106.reg as output stem reading canonical coordinates from /var/lab-data/genetic/id106/surf/lh.sphere.reg. Segmentation fault mris2rgb exited with errors [brain@amygdala genetic]$
Also, when typing check_subject <subject> I get the following warnings: _______ [brain@amygdala genetic]check_subject id106 CHECKING SUBJECT id106 WARN: time for rh.orig is older than rh.qsphere WARN: file rh.inflated is not equal in size to rh.smoothwm WARN: file rh.white is not equal in size to rh.smoothwm WARN: file rh.sphere is not equal in size to rh.smoothwm WARN: file rh.pial is not equal in size to rh.smoothwm WARN: file rh.sphere.reg is not equal in size to rh.smoothwm WARN: time for lh.orig is older than lh.qsphere WARN: file lh.inflated is not equal in size to lh.smoothwm WARN: file lh.white is not equal in size to lh.smoothwm WARN: file lh.sphere is not equal in size to lh.smoothwm WARN: file lh.pial is not equal in size to lh.smoothwm WARN: file lh.sphere.reg is not equal in size to lh.smoothwm WARN: file lh.rh.sphere.reg is not equal in size to lh.smoothwm
My guess is that these problems are connected? Anyone know how to fix this? I am the using the FS version from june (?) 2005 on this project.
Cheers, Lars T .Westlye
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