[Freesurfer] using synthsr with HCP Pipeline

KennethSPrice

3 Aug 2023 3 Aug '23

1:30 p.m.

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Hello all,

I am currently struggling through the HCP Pipeline! I want to use clinical scans processed with synthsr in the HCP Pipeline. 1.) Is this even possible? 2.) Is there a way to get a T2 output with synthsr? 3.) In lieu of the HCP Pipeline, could you use SythSR scans with the HCP Database to do a normal group analysis?

Thanks, Ken

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