Re: [Freesurfer] Matlab Segmentation error when running hippocampal segmentation in dev version

External Email - Use Caution

Hi Jaime, Can you please send us the output you get between calling the command and the error? Cheers, /E

-- Juan Eugenio Iglesias Centre for Medical Image Computing (CMIC) Department of Medical Physics and Biomedical Engineering University College London http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Jaime Gomez borriquear@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Tuesday, 30 October 2018 at 12:33 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Matlab Segmentation error when running hippocampal segmentation in dev version

External Email - Use Caution

Hi, I think I have the same or similar error than [Freesurfer] error in hippocampal subfields and nuclei of amygdala segmentationhttps://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg59953.html I am running segmentHA_T1.sh for one subject and I get this matlab segmentation error bellow: I have 16GB memory in a MacOS, and when the process finished with the error I still have 7 GB of memory free to use. I installed the Matlab R2014b runtime as it is explained herehttps://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala and I have a Matlab 2016 installed.

Thanks! Jaime

------------------------------------------------------------------------ Segmentation violation detected at Tue Oct 30 13:06:09 2018 ------------------------------------------------------------------------

Configuration: Crash Decoding : Disabled Current Visual : Quartz Default Encoding : ISO-8859-1 MATLAB Architecture: maci64 MATLAB Root : /Applications/freesurfer/MCRv84 MATLAB Version : 8.4.0.150421 (R2014b) Operating System : Darwin 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64 Processor ID : x86 Family 6 Model 62 Stepping 4, GenuineIntel Software OpenGL : 0 Virtual Machine : Java 1.7.0_55-b13 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode Window System : Quartz

Fault Count: 1

Abnormal termination: Segmentation violation

Register State (from fault): RAX = 00007fb47210a800 RBX = 00007fb47210a800 RCX = 00007000050c92f0 RDX = 0000000112fb097e RSP = 00007fb47210a800 RBP = 00009b63050c92f0 RSI = 00007fb470d3f910 RDI = 0000000000000000

R8 = 00007fb47691da70 R9 = 00007fb47210a800 R10 = 000000011d44376a R11 = 0000000000000000 R12 = 00007000050c9350 R13 = 0000000112dfe3c7 R14 = 00007000050c93c0 R15 = 000000011d443777

RIP = 0000000117f94f40 RFL = 00007fb47691da70

CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8

Stack Trace (from fault): [ 0] 0x0000000107817e64 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260 _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052 [ 1] 0x000000010781ba2a /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562 _ZN2fl4test17terminate_handledEv+00000906 [ 2] 0x000000010781b477 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103 _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119 [ 3] 0x000000010e399b7a /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962 _Z32mnRunPathDependentInitializationv+00003146 [ 4] 0x000000010e399e58 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696 _Z32mnRunPathDependentInitializationv+00003880 [ 5] 0x000000010e397733 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675 mnFatalSignalHandler+00000275 [ 6] 0x00007fff6b0d9b3d /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029 [ 7] 0x0000000112dff6f8 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568 _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000 [ 8] 0x0000000112defd67 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679 jni_GetMethodID+00000126 [ 9] 0x00000001117b1271 /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369 _Z12mljGetMethodP7_jclassPKcS2_+00000049 [ 10] 0x000000011cc9e366 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886 _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150 [ 11] 0x000000011cca3ef4 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00622324 _ZN10ScreenImpl13getScreenSizeEv+00000036 [ 12] 0x000000011cca22e2 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00615138 _ZNK2ui24RootScreenAndPointerImpl13getScreenSizeEv+00000018 [ 13] 0x000000011cca6f58 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00634712 _ZN2ui4Root17getScreenSizeImplEPN4mcos11COSPropInfoEPNS1_9COSClientEPNS1_12COSInterfaceE+00000040 [ 14] 0x000000011d0ddd13 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+05053715 _ZN7hgutils6StubPIIN2ui4RootENS_15PropertyStorageIN8graphics8datatype8PositionENS_6NoModeENS_21NoSerializableStorageEEEE8getValueEPN4mcos12COSInterfaceE+00000099 [ 15] 0x000000010f3e9a6e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00371310 _ZN4mcos13COSInterfaceI18igetDirectInternalEPNS_12COSInterfaceE+00000110 [ 16] 0x000000010f3dfc80 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00330880 _ZN4mcos13COSInterfaceI10igetDirectEPKNS_9COSClientEPNS_12COSInterfaceE+00000128 [ 17] 0x000000010f44f12b /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00786731 _ZN4mcos28getValueOfKnownClassPropertyEP11mxArray_tagmPKS0_NS_15COSInterfacePtrEPKNS_9COSClientE+00000411 [ 18] 0x000000010f450070 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00790640 _ZN4mcos16getPropertyValueEPKNS_9COSClientEPNS_8COSClassEPK11mxArray_tagPKcmPS5_+00000416 [ 19] 0x000000010f450483 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00791683 _ZNK4mcos5GetMI6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000355 [ 20] 0x000000010f4381f2 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722 _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466 [ 21] 0x000000010f43af4e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494 [ 22] 0x000000010f438b3e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00695102 _Z18mcosCallMethodImplN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_bb+00000286 [ 23] 0x000000010f439a82 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699010 _Z12omCallMethodN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_b+00000114 [ 24] 0x000000011e44c6c2 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00440002 _ZN7hgutils17MCOSMethodInvoker6invokeEPKN4mcos9COSClientERiPNS1_8COSValueEiPKS6_+00000866 [ 25] 0x000000011e44c220 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438816 _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDERKNS0_12MemberAccessEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSD_+00000112 [ 26] 0x000000011e44c1a7 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438695 _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSA_+00000055 [ 27] 0x000000011e432292 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00332434 _ZThn8_NK7hgutils22HGPropHandlerClassInfo16areChildrenSavedEv+00029170 [ 28] 0x000000010f4381f2 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722 _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466 [ 29] 0x000000010f43af4e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494 [ 30] 0x000000010f439d41 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713 _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417 [ 31] 0x000000010f4c5930 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01272112 _Z18omCallOpaqueMethodP11mxArray_tagS0_iPS0_iPPKS_+00000112 [ 32] 0x000000011c4ed353 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgbuiltins.dylib+00193363 hgGetWrapper+00000435 [ 33] 0x000000010f270cc6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00117958 _ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2_+00000086 [ 34] 0x000000010f25912d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333 [ 35] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 36] 0x000000010e5b8dd8 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136 inPcodeWalker+00022552 [ 37] 0x000000010e5b5917 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124631 inPcodeWalker+00009047 [ 38] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 39] 0x000000010e5b21c6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886 [ 40] 0x000000010e6541f1 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337 [ 41] 0x000000010f2b5c28 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400424 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000600 [ 42] 0x000000010f499e8e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01093262 _ZNK4mcos17MScopedMethodInfo6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000606 [ 43] 0x000000010f437597 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00689559 _ZN24OpaqueMethodCallMetaData11callMMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000359 [ 44] 0x000000010f43ae63 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704099 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000259 [ 45] 0x000000010f439d41 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713 _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417 [ 46] 0x000000010f4c5ee8 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01273576 _Z18omCallStaticMethodP11mxArray_tagiPS0_iPPKS_+00000088 [ 47] 0x000000010f54ee64 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01834596 _ZN17Mfh_opaque_static11dispatch_mfEiPP11mxArray_tagiS2_+00000116 [ 48] 0x000000010f25912d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333 [ 49] 0x000000010f54bacc /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01821388 _ZN10Mfh_opaque11dispatch_fhEiPP11mxArray_tagiS2_+00000028 [ 50] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 51] 0x000000010e56c59e /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00824734 inCallFcnFromReference+00000110 [ 52] 0x000000010e5b5003 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01122307 inPcodeWalker+00006723 [ 53] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 54] 0x000000010e5b21c6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886 [ 55] 0x000000010e6541f1 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337 [ 56] 0x000000010f2b5c55 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400469 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000645 [ 57] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 58] 0x000000010e5b8dd8 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136 inPcodeWalker+00022552 [ 59] 0x000000010e5b5702 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124098 inPcodeWalker+00008514 [ 60] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 61] 0x000000010e5b0cad /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105069 inInterPcode+00000157 [ 62] 0x000000010e5a7b9f /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01067935 _ZN12InterpBridge33DoMatlabFcnCallInDesiredWorkspaceEiPP11mxArray_tagiPPKS0_P13Mfh_MATLAB_fnP15inWorkSpace_tag+00004015 [ 63] 0x000000010e5a9a79 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01075833 _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvPiP12_pcodeheaderS3_PP11mxArray_tag12inDebugCheckENS1_5list5INS1_5valueIS3_EENSD_IS5_EENS0_3argILi1EEENSG_ILi2EEENSD_IS9_EEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S3_S8_b+00000073 [ 64] 0x000000010e5a528d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01057421 _Z12inEvalStringP15_memory_contextRKSbItSt11char_traitsItESaItEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002877 [ 65] 0x000000010e5a57cd /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01058765 _ZN12InterpBridge22EvalCmdWithLocalReturnERKSbItSt11char_traitsItESaItEEPibb+00000141 [ 66] 0x000000010e5a5c05 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01059845 _ZN12InterpBridge7EvalCmdERKSbItSt11char_traitsItESaItEEb+00000021 [ 67] 0x000000010e503347 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00394055 inEvalCmd+00000119 [ 68] 0x000000010e3717fa /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00223226 _Z16mnRunLoginScriptv+00000586 [ 69] 0x000000010e398f63 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00384867 _Z32mnRunPathDependentInitializationv+00000051 [ 70] 0x000000010e37f80c /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00280588 _ZN11mcrInstance26init_on_interpreter_threadEP11MfileReaderP13MexFileReader+00000988 [ 71] 0x000000010e38dfb8 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00339896 _ZN5boost6detail8function21function_obj_invoker0INS_3_bi6bind_tIbNS_4_mfi3mf2Ib11mcrInstanceP11MfileReaderP13MexFileReaderEENS3_5list3INS3_5valueIPS7_EENSE_IS9_EENSE_ISB_EEEEEEbE6invokeERNS1_15function_bufferE+00000040 [ 72] 0x000000010e38cdc1 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335297 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE29doNotRethrowMxArrayExceptionsERKN5boost8functionIFbvEEE+00000033 [ 73] 0x000000010e38dbd9 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00338905 _ZN5boost6detail11task_objectIbNS_3_bi6bind_tIbPFbRKNS_8functionIFbvEEEENS2_5list1INS2_5valueIS6_EEEEEEE6do_runEv+00000025 [ 74] 0x000000010e38d276 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00336502 _ZN5boost6detail9task_baseIbE3runEv+00000166 [ 75] 0x000000010e38d067 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335975 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE3runEv+00000023 [ 76] 0x000000010e357f90 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00118672 _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000032 [ 77] 0x0000000105632005 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+00196613 _ZN10eventqueue18UserEventQueueImpl5flushEv+00001205 [ 78] 0x000000010facca65 /Applications/freesurfer/MCRv84//bin/maci64/libmwuix.dylib+00043621 _Z25isHandleUserEventCallbackPFvPvE+00000501 [ 79] 0x0000000105701a45 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01047109 _Z21svWS_ProcessCallbacksv+00016693 [ 80] 0x00000001056fd152 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01028434 _Z25svWS_ProcessPendingEventsiib+00000834 [ 81] 0x00000001056fce5e /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027678 _Z25svWS_ProcessPendingEventsiib+00000078 [ 82] 0x000000010e35818f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183 _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095 [ 83] 0x000000010e35849f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967 _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335 [ 84] 0x000000010e33ed1b /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643 _Z26run_init_and_handle_eventsPv+00000059 [ 85] 0x00007fff6b0e233d /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126 [ 86] 0x00007fff6b0e52a7 /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070 [ 87] 0x00007fff6b0e1425 /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013

If this problem is reproducible, please submit a Service Request via: http://www.mathworks.com/support/contact_us/

A technical support engineer might contact you with further information.

Thank you for your help.** This crash report has been saved to disk as /Users/jaime/matlab_crash_dump.9878-1 **

------------------------------------------------------------------------ Segmentation violation detected at Tue Oct 30 13:06:10 2018 ------------------------------------------------------------------------

Configuration: Crash Decoding : Disabled Current Visual : Quartz Default Encoding : ISO-8859-1 MATLAB Architecture: maci64 MATLAB Root : /Applications/freesurfer/MCRv84 MATLAB Version : 8.4.0.150421 (R2014b) Operating System : Darwin 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64 Processor ID : x86 Family 6 Model 62 Stepping 4, GenuineIntel Software OpenGL : 0 Virtual Machine : Java 1.7.0_55-b13 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode Window System : Quartz

Fault Count: 2

Abnormal termination: Segmentation violation

Register State (from fault): RAX = 00007fb47210a800 RBX = 00007fb47210a800 RCX = 00007000050c92f0 RDX = 0000000112fb097e RSP = 00007fb47210a800 RBP = 00009b63050c92f0 RSI = 00007fb470d3f910 RDI = 0000000000000000

R8 = 00007fb47691da70 R9 = 00007fb47210a800 R10 = 000000011d44376a R11 = 0000000000000000 R12 = 00007000050c9350 R13 = 0000000112dfe3c7 R14 = 00007000050c93c0 R15 = 000000011d443777

RIP = 0000000117f94f40 RFL = 00007fb47691da70

CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8

Stack Trace (from fault): [ 0] 0x0000000107817e64 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260 _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052 [ 1] 0x000000010781ba2a /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562 _ZN2fl4test17terminate_handledEv+00000906 [ 2] 0x000000010781b477 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103 _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119 [ 3] 0x000000010e399b7a /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962 _Z32mnRunPathDependentInitializationv+00003146 [ 4] 0x000000010e399e58 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696 _Z32mnRunPathDependentInitializationv+00003880 [ 5] 0x000000010e397733 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675 mnFatalSignalHandler+00000275 [ 6] 0x00007fff6b0d9b3d /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029 [ 7] 0x0000000112dff6f8 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568 _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000 [ 8] 0x0000000112defd67 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679 jni_GetMethodID+00000126 [ 9] 0x00000001117b1271 /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369 _Z12mljGetMethodP7_jclassPKcS2_+00000049 [ 10] 0x000000011cc9e366 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886 _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150 [ 11] 0x000000011cca3ef4 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00622324 _ZN10ScreenImpl13getScreenSizeEv+00000036 [ 12] 0x000000011cca22e2 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00615138 _ZNK2ui24RootScreenAndPointerImpl13getScreenSizeEv+00000018 [ 13] 0x000000011cca6f58 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00634712 _ZN2ui4Root17getScreenSizeImplEPN4mcos11COSPropInfoEPNS1_9COSClientEPNS1_12COSInterfaceE+00000040 [ 14] 0x000000011d0ddd13 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+05053715 _ZN7hgutils6StubPIIN2ui4RootENS_15PropertyStorageIN8graphics8datatype8PositionENS_6NoModeENS_21NoSerializableStorageEEEE8getValueEPN4mcos12COSInterfaceE+00000099 [ 15] 0x000000010f3e9a6e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00371310 _ZN4mcos13COSInterfaceI18igetDirectInternalEPNS_12COSInterfaceE+00000110 [ 16] 0x000000010f3dfc80 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00330880 _ZN4mcos13COSInterfaceI10igetDirectEPKNS_9COSClientEPNS_12COSInterfaceE+00000128 [ 17] 0x000000010f44f12b /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00786731 _ZN4mcos28getValueOfKnownClassPropertyEP11mxArray_tagmPKS0_NS_15COSInterfacePtrEPKNS_9COSClientE+00000411 [ 18] 0x000000010f450070 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00790640 _ZN4mcos16getPropertyValueEPKNS_9COSClientEPNS_8COSClassEPK11mxArray_tagPKcmPS5_+00000416 [ 19] 0x000000010f450483 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00791683 _ZNK4mcos5GetMI6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000355 [ 20] 0x000000010f4381f2 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722 _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466 [ 21] 0x000000010f43af4e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494 [ 22] 0x000000010f438b3e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00695102 _Z18mcosCallMethodImplN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_bb+00000286 [ 23] 0x000000010f439a82 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699010 _Z12omCallMethodN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_b+00000114 [ 24] 0x000000011e44c6c2 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00440002 _ZN7hgutils17MCOSMethodInvoker6invokeEPKN4mcos9COSClientERiPNS1_8COSValueEiPKS6_+00000866 [ 25] 0x000000011e44c220 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438816 _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDERKNS0_12MemberAccessEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSD_+00000112 [ 26] 0x000000011e44c1a7 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438695 _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSA_+00000055 [ 27] 0x000000011e432292 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00332434 _ZThn8_NK7hgutils22HGPropHandlerClassInfo16areChildrenSavedEv+00029170 [ 28] 0x000000010f4381f2 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722 _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466 [ 29] 0x000000010f43af4e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494 [ 30] 0x000000010f439d41 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713 _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417 [ 31] 0x000000010f4c5930 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01272112 _Z18omCallOpaqueMethodP11mxArray_tagS0_iPS0_iPPKS_+00000112 [ 32] 0x000000011c4ed353 /Applications/freesurfer/MCRv84//bin/maci64/libmwhgbuiltins.dylib+00193363 hgGetWrapper+00000435 [ 33] 0x000000010f270cc6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00117958 _ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2_+00000086 [ 34] 0x000000010f25912d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333 [ 35] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 36] 0x000000010e5b8dd8 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136 inPcodeWalker+00022552 [ 37] 0x000000010e5b5917 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124631 inPcodeWalker+00009047 [ 38] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 39] 0x000000010e5b21c6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886 [ 40] 0x000000010e6541f1 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337 [ 41] 0x000000010f2b5c28 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400424 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000600 [ 42] 0x000000010f499e8e /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01093262 _ZNK4mcos17MScopedMethodInfo6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000606 [ 43] 0x000000010f437597 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00689559 _ZN24OpaqueMethodCallMetaData11callMMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000359 [ 44] 0x000000010f43ae63 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704099 _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000259 [ 45] 0x000000010f439d41 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713 _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417 [ 46] 0x000000010f4c5ee8 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01273576 _Z18omCallStaticMethodP11mxArray_tagiPS0_iPPKS_+00000088 [ 47] 0x000000010f54ee64 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01834596 _ZN17Mfh_opaque_static11dispatch_mfEiPP11mxArray_tagiS2_+00000116 [ 48] 0x000000010f25912d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781 _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333 [ 49] 0x000000010f54bacc /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01821388 _ZN10Mfh_opaque11dispatch_fhEiPP11mxArray_tagiS2_+00000028 [ 50] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 51] 0x000000010e56c59e /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00824734 inCallFcnFromReference+00000110 [ 52] 0x000000010e5b5003 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01122307 inPcodeWalker+00006723 [ 53] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 54] 0x000000010e5b21c6 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886 [ 55] 0x000000010e6541f1 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337 [ 56] 0x000000010f2b5c55 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400469 _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000645 [ 57] 0x000000010e616d62 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042 _Z19inDispatchFromStackiPKcii+00001650 [ 58] 0x000000010e5b8dd8 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136 inPcodeWalker+00022552 [ 59] 0x000000010e5b5702 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124098 inPcodeWalker+00008514 [ 60] 0x000000010e5b0fb7 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847 inInterPcode+00000935 [ 61] 0x000000010e5b0cad /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105069 inInterPcode+00000157 [ 62] 0x000000010e5a7b9f /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01067935 _ZN12InterpBridge33DoMatlabFcnCallInDesiredWorkspaceEiPP11mxArray_tagiPPKS0_P13Mfh_MATLAB_fnP15inWorkSpace_tag+00004015 [ 63] 0x000000010e5a9a79 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01075833 _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvPiP12_pcodeheaderS3_PP11mxArray_tag12inDebugCheckENS1_5list5INS1_5valueIS3_EENSD_IS5_EENS0_3argILi1EEENSG_ILi2EEENSD_IS9_EEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S3_S8_b+00000073 [ 64] 0x000000010e5a528d /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01057421 _Z12inEvalStringP15_memory_contextRKSbItSt11char_traitsItESaItEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002877 [ 65] 0x000000010e5a57cd /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01058765 _ZN12InterpBridge22EvalCmdWithLocalReturnERKSbItSt11char_traitsItESaItEEPibb+00000141 [ 66] 0x000000010e5a5c05 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01059845 _ZN12InterpBridge7EvalCmdERKSbItSt11char_traitsItESaItEEb+00000021 [ 67] 0x000000010e503347 /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00394055 inEvalCmd+00000119 [ 68] 0x000000010e3717fa /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00223226 _Z16mnRunLoginScriptv+00000586 [ 69] 0x000000010e398f63 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00384867 _Z32mnRunPathDependentInitializationv+00000051 [ 70] 0x000000010e37f80c /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00280588 _ZN11mcrInstance26init_on_interpreter_threadEP11MfileReaderP13MexFileReader+00000988 [ 71] 0x000000010e38dfb8 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00339896 _ZN5boost6detail8function21function_obj_invoker0INS_3_bi6bind_tIbNS_4_mfi3mf2Ib11mcrInstanceP11MfileReaderP13MexFileReaderEENS3_5list3INS3_5valueIPS7_EENSE_IS9_EENSE_ISB_EEEEEEbE6invokeERNS1_15function_bufferE+00000040 [ 72] 0x000000010e38cdc1 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335297 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE29doNotRethrowMxArrayExceptionsERKN5boost8functionIFbvEEE+00000033 [ 73] 0x000000010e38dbd9 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00338905 _ZN5boost6detail11task_objectIbNS_3_bi6bind_tIbPFbRKNS_8functionIFbvEEEENS2_5list1INS2_5valueIS6_EEEEEEE6do_runEv+00000025 [ 74] 0x000000010e38d276 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00336502 _ZN5boost6detail9task_baseIbE3runEv+00000166 [ 75] 0x000000010e38d067 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335975 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE3runEv+00000023 [ 76] 0x000000010e357f90 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00118672 _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000032 [ 77] 0x0000000105632005 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+00196613 _ZN10eventqueue18UserEventQueueImpl5flushEv+00001205 [ 78] 0x000000010facca65 /Applications/freesurfer/MCRv84//bin/maci64/libmwuix.dylib+00043621 _Z25isHandleUserEventCallbackPFvPvE+00000501 [ 79] 0x0000000105701a45 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01047109 _Z21svWS_ProcessCallbacksv+00016693 [ 80] 0x00000001056fd152 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01028434 _Z25svWS_ProcessPendingEventsiib+00000834 [ 81] 0x00000001056fce5e /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027678 _Z25svWS_ProcessPendingEventsiib+00000078 [ 82] 0x000000010e35818f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183 _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095 [ 83] 0x000000010e35849f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967 _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335 [ 84] 0x000000010e33ed1b /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643 _Z26run_init_and_handle_eventsPv+00000059 [ 85] 0x00007fff6b0e233d /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126 [ 86] 0x00007fff6b0e52a7 /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070 [ 87] 0x00007fff6b0e1425 /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013

Abnormal termination: Segmentation violation

Register State (from fault): RAX = 00007fb47210a800 RBX = 00007fb47210a800 RCX = 00007000050d1a00 RDX = 0000000112fb097e RSP = 00007fb47210a800 RBP = 00009b63050d1a00 RSI = 00007fb470d3f910 RDI = 0000000000000000

R8 = 00007fb47691da70 R9 = 00007fb47210a800 R10 = 000000011d44376a R11 = 0000000000000000 R12 = 00007000050d1a60 R13 = 0000000112dfe3c7 R14 = 00007000050d1ad0 R15 = 000000011d443777

RIP = 0000000117f94f40 RFL = 00007fb47691da70

CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8

Stack Trace (from fault): [ 0] 0x0000000107817e64 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260 _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052 [ 1] 0x000000010781ba2a /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562 _ZN2fl4test17terminate_handledEv+00000906 [ 2] 0x000000010781b477 /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103 _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119 [ 3] 0x000000010e399b7a /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962 _Z32mnRunPathDependentInitializationv+00003146 [ 4] 0x000000010e399e58 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696 _Z32mnRunPathDependentInitializationv+00003880 [ 5] 0x000000010e397733 /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675 mnFatalSignalHandler+00000275 [ 6] 0x00007fff6b0d9b3d /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029 [ 7] 0x0000000112dff6f8 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568 _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000 [ 8] 0x0000000112defd67 /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679 jni_GetMethodID+00000126 [ 9] 0x00000001117b1271 /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369 _Z12mljGetMethodP7_jclassPKcS2_+00000049 [ 10] 0x000000011cc9e366 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886 _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150 [ 11] 0x000000011cca323a /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00619066 _ZN10gbtobjects10ScreenData14getScreenWidthEv+00000010 [ 12] 0x000000011ccba1a6 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00713126 _ZN2ui9container9Container16getChildRefFrameEv+00000038 [ 13] 0x000000011ccba55e /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00714078 _ZN2ui9container9Container20fillInUpdateViewInfoERN7hgutils14UpdateViewInfoE+00000046 [ 14] 0x000000011cca74d6 /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00636118 _ZN2ui4Root20fillInUpdateViewInfoERN7hgutils14UpdateViewInfoE+00000022 [ 15] 0x000000011cca279a /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00616346 _ZN10gbtobjects13UpdateVisitor5applyERN2ui4RootE+00000218 [ 16] 0x000000011cdb7f9a /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+01752986 _ZN10gbtobjects20CommitUpdatesManager13performUpdateEv+00000122 [ 17] 0x000000011cdb807b /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+01753211 _ZN10gbtobjects20CommitUpdatesManager24commitAllDatabaseUpdatesEbb+00000027 [ 18] 0x00000001057147c8 /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01124296 _Z26svWS_CommitDatabaseUpdates27svCommitDatabaseUpdatesType+00000152 [ 19] 0x00000001056fce2f /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027631 _Z25svWS_ProcessPendingEventsiib+00000031 [ 20] 0x000000010e35818f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183 _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095 [ 21] 0x000000010e35849f /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967 _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335 [ 22] 0x000000010e33ed1b /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643 _Z26run_init_and_handle_eventsPv+00000059 [ 23] 0x00007fff6b0e233d /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126 [ 24] 0x00007fff6b0e52a7 /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070 [ 25] 0x00007fff6b0e1425 /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013

If this problem is reproducible, please submit a Service Request via: http://www.mathworks.com/support/contact_us/

A technical support engineer might contact you with further information.

Thank you for your help.** This crash report has been saved to disk as /Users/jaime/matlab_crash_dump.9878-2 **

MATLAB is exiting because of fatal error /Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 37: 9878 Killed: 9 "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML $args Darwin jaimes-Mac-Pro.local 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64

T1 hippocampal subfields exited with ERRORS at Tue Oct 30 13:06:10 CET 2018

For more details, see the log file /Users/jaime/vallecas/data/uma/Subject_UMA_0018/UIPA11REV/003_SAG_3D_IR//sujeto_uno/scripts/hippocampal-subfields-T1.log -- Jaime Gomez-Ramirez, PhD Department of NeuroImaging Centre for Research in Neurodegenarative Diseases Fundación Reina Sofiahttp://www.fundacionreinasofia.es/EN/Paginas/home.aspx Valderrebollo, 5 Madrid, Spain