Hi Markus,
What is the output when you run the following: (this will list libraries you have access to)
/sbin/ldconfig -N -v $(sed 's/:/ /' <<< $LD_LIBRARY_PATH) | grep libvtkverdict.so
best, Andrew
On Sep 15, 2017, at 3:33 AM, Markus Gschwind <markus.gschwind@gmail.commailto:markus.gschwind@gmail.com> wrote:
Hi experts,
I am installing freeusrfer on our cluster which is running Centos6.
[gschwind@login1 ~]$ uname -a Linux login1.cluster 2.6.32-696.1.1.el6.x86_64 #1 SMP Tue Apr 11 17:13:24 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Freeview aborts without any other complaint.
[gschwind@login1 ~]$ freeview Abort
When running freeview.bin it complains about a libraries error:
[gschwind@login1 ~]$ freeview.bin freeview.bin: error while loading shared libraries: libvtkverdict.so.5.6: cannot open shared object file: No such file or directory
I searched the archives and found this info to be given,
[gschwind@login1 ~]$ ls -l $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* -rwxr-xr-x 1 sagon unige 189017 Aug 17 2010 /opt/ebsofts/Core/FreeSurfer/5.3.0-centos6_x86_64/lib/vtk/lib/vtk-5.6/libvtkverdict.so -rwxr-xr-x 1 sagon unige 189017 Aug 17 2010 /opt/ebsofts/Core/FreeSurfer/5.3.0-centos6_x86_64/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 -rwxr-xr-x 1 sagon unige 189017 Aug 17 2010 /opt/ebsofts/Core/FreeSurfer/5.3.0-centos6_x86_64/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6.0
I then integrated this into bashrc
export LD_LIBRARY_PATH=$FREESURFER_HOME/lib/vtk/lib/vtk-5.6
however, the problem persists.
Any help is highly appreciated!
Thanks you! Markus _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer