I attempted to re-run using the -clean-aseg flag, but this time got an error which said:
ERROR: cannot find [subject path]/mri/aseg.mgz
Is the underlying problem that I used two different versions? Should I sync up the two versions (one is on a server and one is on my desktop) in order to avoid this issue altogether?
-----Original Message----- From: Nick Schmansky [mailto:nicks@nmr.mgh.harvard.edu] Sent: Wed 2/11/2009 12:43 PM To: Dankner, Nathan (NIH/NIMH) [F] Cc: Freesurfer Mailing List Subject: RE: [Freesurfer] exited with errors
they can be started from the -autorecon2 stage (also include - autorecon3).
On Wed, 2009-02-11 at 12:05 -0500, Dankner, Nathan (NIH/NIMH) [F] wrote:
Yes, the versions are different. I am not sure of the exact version numbers, but I believe they are the 2 most recent releases. Do I need to run the scans from autorecon1 with the clean-aseg command, or can I run them from later processing steps? Thanks for your help,
Nathan
-----Original Message----- From: Nick Schmansky [mailto:nicks@nmr.mgh.harvard.edu] Sent: Wed 2/11/2009 11:53 AM To: Dankner, Nathan (NIH/NIMH) [F] Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] exited with errors
What version of freesurfer are you using now and what version was used to process the data? I suspect mixed versions were used. You can rerun with the -clean-aseg flag to start again.
On Wed, 2009-02-11 at 10:43 -0500, Dankner, Nathan (NIH/NIMH) [F] wrote:
Hello all,
I have recently been running some scans with very few defects, but have been encountering a particular error message on occasion when I try to run it through autorecon2 and autorecon3 after a bit of manual correction. The error output is:
MRI_fill: could not read segmentation from aseg.auto_noCC.mgz reading segmented volume aseg.auto_noCCseg.mgz... ERROR: cannot find [subject path]/aseg.auto_noCCseg.mgz No such file or directory
Any suggestions as to why this is happening?
Nathan
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