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Dear Eugenio,
Thank you for your immediate response.
Please see below.
Best, Georgina

On 24 Jan 2023, at 12:06 PM, Georgina Angelopoulou georginangel@gmail.com wrote:
Dear Eugenio,
Thank you for your immediate response.
Please see below.
Best, Georgina
<Screenshot 2023-01-24 at 12.01.58 PM.png>
On 24 Jan 2023, at 12:27 AM, Georgina Angelopoulou georginangel@gmail.com wrote:
Hello Freesurfer experts,
I have accomplished hippocampal subfields segmentation using Freesurfer 7.3.2. However, I have trouble when I try to gather all volumes of all subjects in one single txt file. I type quantifyHAsubregions.sh hippoSf T1 testhippo.txt
And the output that appears is:
Gathering results from subjects in: /Users/…/ALBION Using the prefix name: hippoSf Using the suffix name: T1 And writing them to: testhippo.txt
However, there is no txt file in my directory. I have tried included all subjects’ names in the script and I am still facing the same problem. Do you have any ideas to resolve this?
Thank you in advance, Best, Georgina
