Hi Rujing
you can use either our FTP site or our file drop. Info for this is at http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
and https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
cheers Bruce
On Mon, 16 Dec 2013, Rujing Zha wrote:
Hi Bruce, Maybe 163 email has some problems. I will try my gmail to send you and Louis my data. But I donot know whether your email can get attachment size 289M? Thanks. All the best. 2013-12-16
Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:37 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu no, I didn't get it On Mon, 16 Dec 2013, Rujing Zha wrote:
Dear Bruce, Thanks Bruce. That's all right. I want to know if I e-mail to you my subject's data successfully. The subject's image had a incorrect segmentation in surfs after recon-all. Thanks in advance. All the best. 2013-12-16 _________________________________________________________________________
___
Rujing Zha _________________________________________________________________________
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发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:24 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
?? ?> command-line ERROR
收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu sorry, I don't know that code very well. Doug is probably the right one t
o ?? ?
help you Bruce On Mon, 16 Dec 2013, Rujing Zha wrote: > Dear Bruce, > I did setup the "-run 015" not "013" in unpacksdcmdir as I told in prev
io
us > message. But it generated the "013" folder automatically after running
?? ?
> unpacksdcdir, which made me so confused. > As it created the "013" folder, I guess unpacksdcmdir didnot recognized
> structure image correctly which was in the "15th" line of the scan.info
. ?? ?> Thanks Bruce.
> All the best. > > 2013-12-16 > > _______________________________________________________________________
__
___ > Rujing Zha > > _______________________________________________________________________
__
___ > 发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu > 发送时间：2013-12-16 22:12 > 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from th
e ?? ?> command-line ERROR
> 收件人："Rujing Zha"charujing123@163.com > 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu > > but why are you giving recon-all the path to run 013 instead of 015? I
?? ?
?? ?> don't know the fsfast file structure, but your scan.info says that 01 3 is
?? ?an EPI fun and 015 is the mprage > > On Sat, > 14 Dec 2013, Rujing Zha wrote: > > > Hi Bruce, > > It generated a 013 subfolder in after running this code "unpacksdcmdi
r ?? ?
> > -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3dana
t ?? ?mg
> z > > 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zh
an
g ?? ?in > > the unpack.log. > > Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liuj
un
ha > o", > > and it finished without error. > > "recon-all -s liujunhao -all" was run and ERROR would be displayed:
?? ?
> > ERROR: input(s) cannot have multiple frames! > > The recon-all.log unpack.log and scan.info were unloaded in the attac
hm
en > t. > > Thanks. > > All the best. > > > > 2013-12-14 > > > > _____________________________________________________________________
__
__ > ___ > > Rujing Zha > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%C2%A0%C2%A0%C2%... > > > The information in this e-mail is intended only for the person to whom
?? ?it
i > s > addressed. If you believe this e-mail was sent to you in error and the
?? ?e-
ma > il > contains patient information, please contact the Partners Compliance He
lp
Li > ne at > http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C...
?? ?in
e > rror > but does not contain patient information, please contact the sender and
p
ro > perly > dispose of the e-mail. > > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%C2%A0 The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C... rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.