Hi Panos
I'm not sure I understand. Isn't that already what the aseg is? E.g. voxel intensity 17 means left hippocampus?
Bruce On Sun, 7 Jul 2019, Fotiadis, Panagiotis wrote:
Hello,
I was wondering whether there is a way to assign a different intensity value on each voxel within a parcellation file (such as aseg.mgz). What I’m essentially trying to do is create a file (using the aseg.mgz file as a template) where each voxel represents a different ROI. I can think of a way to do that in Freeview for each individual voxel but I wasn’t sure whether there was a more efficient/automated way in either bash or matlab.
Let me know if the above doesn’t make any sense, and thanks in advance!
Best,
Panos