12 Jun
2014
12 Jun
'14
12:09 p.m.
Dear Freesurfer Experts,
I have two questions:
1. How can I add a previously created a tumor mask along with the mprage to improve segmentation?
2. I ran recon-all on a subject with extreme hydrocephalus. Registration to Talairach space and skull stripping were OK. However, a part of occipital white matter was not recognized as white matter even after adding control points and running recon-all -autorecon2-cp -autorecon3 due to the large ventricle as you can see in the attachment. What can you recommend to fix this problem?
Thank you for your help!
Cheers,
Andrea
