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Hi. I try to get information about the progress of my subjects out of the log files, writing a script that reports about the progress and sends progress messages.
For that I try to get the individual stages as progress indicator from the recon-all.log. Usually lines like this indicate the start of a stage:
#@# ASeg Stats Tue Sep 10 11:12:13 CEST 2013
the date of course is variable and indicates the current date.
My problem now is exactly that Stage ASeg Stats, as it occurs twice.
the first occurrence is after inflate2 (smooth2, inflate2, aseg stats), the second one is, as documented after cortribbon (parc stats 2, cortical ribbon mask, aseg stats, aparc-to-aseg).
But [1] lists only the second occurrence. Is that wanted? is it due to my strategy to run autorecon1, autorecon2 and autorecon3 individually instead of autorecon-all -all?
regards and thanks for your help Peter
[1] http://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable