Is $SUBJECTS_DIR/$subject exist?
On 12/18/2012 05:13 PM, priyank wrote:
I have these files in the folder 18135. 18135.RS.mgz 18135_RS_register.dat.log 18135_RS_register.dat.sum 18135.RS+orig.BRIK 18135_RS_register.dat.log.old 18135.RS.template.mgz 18135.RS+orig.HEAD 18135_RS_register.dat.mincost 18135_RS_register.dat 18135_RS_register.dat.param
and other freesurfer files in the folder 18135_FS (in the respective folders.. mri, surf...)...
I copied 18135.RS.mgz in the 18135_FS/mri/orig folder also.
I have tried both directories to be SUBJECTS_DIR but it didn't work.
Do I need to move all the files in 18135_FS/mri/orig folder?
On 12/18/2012 4:38 PM, Bruce Fischl wrote:
what is your SUBJECTS_DIR env variable? On Tue, 18 Dec 2012, priyank wrote:
Hi, I am using the command to check my registration and getting this error message: could not find orig as either mgz or COR. This is the command I am using. tkregister2 --mov 18135.RS.mgz --reg 18135_RS_register.dat --surf ----------------------------------------OUTPUT--------------------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume 18135.RS.mgz reg file 18135_RS_register.dat LoadVol 1 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- -0.994 -0.040 0.100 2.799; -0.097 -0.071 -0.993 2.262; -0.047 0.997 -0.067 5.775; 0.000 0.000 0.000 1.000; float2int = 0
ERROR: could not find orig as either mgz or COR
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