Hi Bruce,
I am trying to do just that using the following command line: mri_aparc2aseg --s ${subject} --labelwm --hypo-as-wm --rip-unknown --volmask --o ${subj_dir}/mri/wmdivided --annot aparc.split
After the slice labeling, I get the following:
Used brute-force search on 872 voxels Fixing Parahip LH WM Found 0 clusters Fixing Parahip RH WM Found 0 clusters Writing output aseg to /home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided unknown file type for file (/home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided) subject = FSH_09062013 annotation = wmdivided hemi = lh outdir = /home/bauer/freesurfer_subjects/FSH_09062013/wm_hardi_labels surface = white
Any suggestions?
Thanks, Corinna
On Tue, Jul 1, 2014 at 6:55 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Corinna
not really, as that is a surface-based utility. You could divide the cortical labels and then recrate the wmparc from it, which might do what you want.
cheers Bruce
On Tue, 1 Jul 2014, Corinna Bauer wrote:
hello, I was wondering if it was possible to use mris_divide_parcellation on
white
matter labels.
Thanks,
Corinna
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