Re: [Freesurfer] yet another newbie question (YANQ)

Hi Donald Yes, you can use mri_convert -rl rawavg.mgz <input vol> <output vol>

Cheers Bruce

On Jul 30, 2014, at 8:12 PM, "Krieger, Donald N." kriegerd@upmc.edu wrote:

Thanks for the helpful responses to the previous questions, Bruce. It’s great to not stay stuck for long.

Here’s another. I am working with voxels in the original MRI coordinate system. It appears that voxel and vertex coordinates in freesurfer are transformed to a 1 mm x 256^3 volume. Is there a tool to transform these back to MRI coordinates, preferably command line? Or is the transform itself easily found?

Thanks again.

Regards,

Don

Don Krieger, Ph.D. Department of Neurological Surgery University of Pittsburgh (412)648-9654 Office (412)521-4431 Cell/Text

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer