Hello,
I have been running recon-all and trac-all analyses through remote access on the openmind.mit.edu cluster (from a windows7 i7 laptop using MobaXterm). The following software was set available:
module add openmind/fsl/5.0.7
module add openmind/freesurfer/5.3.0
module add openmind/git
module add netcdf/gcc/64/4.3.1.1
module add cuda55/toolkit/5.5.22
export LD_LIBRARY_PATH=/om/user/satra/projects/SAD/scripts/lib/:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/om/user/ksitek/HCP/scripts/lib/:/cm/shared/apps/cuda55/toolkit/5.5.22/lib64:/cm/shared/apps/cuda55/toolkit/5.5.22/lib:/cm/shared/apps/cuda65/toolkit/6.5.14/lib64:$LD_LIBRARY_PATH
I guess all analyses went fine, but when I try to inspect output data by using freeview I encounter the following problem: I can open Freeview but when it tries to open a brain volume, the software always crashes and gives this error message:
boets_env[20:08][2.53][26%]bboets@openmind:dmri$ freeview -v dtifit_FA.nii.gz & [1] 7594 boets_env[20:09][2.58][26%]bboets@openmind:dmri$ X Error: BadRequest (invalid request code or no such operation) 1 Extension: 146 (Uknown extension) Minor opcode: 187 (Unknown request) Resource id: 0x8000c3 [xcb] Too much data requested from _XRead [xcb] This is most likely caused by a broken X extension library [xcb] Aborting, sorry about that. freeview.bin: xcb_io.c:735: _XRead: Assertion `!xcb_xlib_too_much_data_requested' failed. Abort freeview -v dtifit_FA.nii.gz [1]+ Exit 134 freeview -v dtifit_FA.nii.gz
I logged in into the server using ssh. The problem is identical while using ssh –X or ssh –Y.
(likewise if I try to visualize images through mricron on the server it works extremely slowly and unreliably ...)
Do you have any advice on how to handle this? I did not find any solutions in the archive?
Thanks!
Bart
Bart Boets, PhD Postdoctoral fellow of the Research Foundation - Flanders Child and Adolescent Psychiatry – KU Leuven, Belgium
Visiting Researcher at the Gabrieli Lab / Mc Govern Institute for Brain Research Department of Brain and Cognitive Sciences - Massachusetts Institute of Technology 43 Vassar Street, 46-5115-B, Cambridge, MA 02139, USA tel: +1 617-324-6365 fax: +1 617-324-5311 Email: bart.boets@ppw.kuleuven.behttps://owa.groupware.kuleuven.be/owa/bart.boets@ppw.kuleuven.be or bboets@mit.eduhttps://owa.groupware.kuleuven.be/owa/bboets@mit.edu https://perswww.kuleuven.be/~u0032380/