Hi Doug,
Yes i was visualising it on fsaverage. I switched to sub003 and the ROI looks perfect. What a simple mistake, thanks for your help. Kind regards, Bronwyn Overs Research Assistant
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On 27 Jan 2017, at 10:26 am, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
Are you visualizing the output on subject sub003? It looks like fsaverage
On 01/26/2017 06:23 PM, Bronwyn Overs wrote:
Hi Mailing list,
I have been running the mri_label2label command and have encountered a problem with the newly generated label. The command I am running is as follows:
mri_label2label --srclabel "$SUBJECTS_DIR/fsaverage/label/lh.sm20.lme.test.B2-0001.label" --srcsubject fsaverage_mod --trglabel "Test.label" --trgsubject “sub003" --regmethod surface --hemi lh
When I visualise the original label there is a distinct temporal ROI outlined. However, when I load the label for my individual subject there is no temporal ROI outlined, instead I see numerous widely dispersed vertices highlighted across the whole surface of the cortex. Can you identify what the issue is? I have attached images that show the input and output labels overlayed on an inflated surface.
Kind regards,
Bronwyn Overs Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia *M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
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