Hi David - This log only shows output from the -path step and not from the -prep step. The file that's missing should be created during the -prep step, so there's no way to figure out what went wrong without seeing the output from the pre-processing.
Please cc the freesurfer list on your reply.
Thank you, a.y
On Sat, 16 Nov 2013, David Soto wrote:
Thanks, please see attachedI only noticed this ERROR: Could not open/home/dsoto/Documents/fmri/rsdtianawmgui/14AB/dlabel/diff/rh.ilf_AS_avg33_m ni_bbr_cpts_5_std.txt cheers DS
On Fri, Nov 15, 2013 at 8:55 PM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi David - Can you please send us the trac-all.log file for this subject? Without seeing where it stopped and what error messages there are it's hard to guess what's going on. Thanks, a.y On Fri, 15 Nov 2013, David Soto wrote: > Hi - > trac-all completed in all my Ps except one > and I noticed that the dlabel/diff output does not contain all the files > > I assessed whether it could be do to poor registration, by checking > the aparc+aseg > file and looks allright > > I also checked the registration of FA maps to standard space by > freeview -v $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz > dtifit_FA.bbr.nii.gz > and seems fine > > also > > freeview -v brain_anat_orig.nii.gz lowb_brain.nii.gz > > which also seems fine > > any ideas pls? > > thanks! > > ds > > > > On Fri, Aug 16, 2013 at 5:14 PM, Anastasia Yendiki > <ayendiki@nmr.mgh.harvard.edu> wrote: > > I suspect the current problem is caused by poor registration. > Have you checked the aparc+aseg and/or the registration from > diffusion to anatomical and from anatomical to MNI? > > On Fri, 16 Aug 2013, David Soto wrote: > > > > -- > http://www1.imperial.ac.uk/medicine/people/d.soto/ > > > > >The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.